Use one native app-server for terminal, Web and phone clients while retaining the existing CLI and Runner lifecycle.
Synchronize native queues, permissions, question history and steering state; preserve explicit permission precedence and per-turn usage models. Resume inactive clear commands through Runner and reject independent child cold resumes.
Add shared-runtime regression tests, generated protocol fixtures and lifecycle documentation.
Bridge main-session PermissionRequest hooks without suppressing the native
terminal dialog. Reconcile replies against native results and clean up on
timeout, cancellation, mode switches, and session changes.
Keep reply IDs distinct from native tool IDs across web and native clients;
add protocol fixtures and regression tests.
Refs #1796
weishu